tag:blogger.com,1999:blog-89761722011-04-22T00:07:54.503+05:30dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.comBlogger1231100tag:blogger.com,1999:blog-8976172.post-1115928114309935292005-05-13T01:27:00.000+05:302005-05-13T01:31:54.376+05:30

Hello all!I will not be able to post here from now onwards, I installed wordpress at my site and i will blog there. My new blog is located at blog.dnamicroarrays.info. Thanks

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com1tag:blogger.com,1999:blog-8976172.post-1115102937277224082005-05-03T12:09:00.000+05:302005-05-03T12:21:08.026+05:30

Molecular Systems Biology is an open access journal from EMBO and NPG group, and i think this is the first open access journal from EMBO and NPG group. Molecular Systems Biology is an online journal and its published weekly. Authors can submit the data in XML format, Systems Biology MArkup Lnaguage (SBML).Molecular Systems Biology covers all aspects of the rapidly growing and interdisciplinary

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1115102217297434182005-05-03T12:03:00.000+05:302005-05-03T12:06:57.296+05:30

The development of a walking platform which will allow unconstrained movement in virtual worlds is the goal of the CyberWalk project, initiated by scientists of the Max Planck Institute for Biological Cybernetics in Tuebingen, Germany, together with their colleagues from the Technical University Munich, the Swiss Federal Institute of Technology, Zurich, Switzerland and the University Roma,

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1115101465493396012005-05-03T11:50:00.000+05:302005-05-03T11:58:16.940+05:30

IGIB is planning to setup super computer facility with HP four-teraflop peak computational capabilities. Institute of Genomics and Integrative Biology is a constituent laboratory of CSIR, India and is poineer in Genome and genome informatics.IGIB will use the super computing facility for research in complex molecular dynamics simulations, protein structure and in silico toxicity studies, said

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1113330301416859182005-04-12T23:53:00.000+05:302005-04-12T23:55:01.420+05:30

Source: BMC BioinformaticsBackground: Recent advances in sequencing techniques leading to cost reduction have resulted in the generation of a growing number of sequenced eukaryotic genomes. Computational tools greatly assist in defining open reading frames and assigning tentative annotations. However, gene functions cannot be asserted without biological support through, among other things,

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1113285819614563432005-04-12T11:29:00.000+05:302005-04-12T11:33:39.616+05:30

Source: EurekAlertToday sees the launch of BioModels, the world's first database of annotated biological models. BioModels is the result of a collaboration led by the European Bioinformatics Institute (UK) and the SBML Team, an international group that develops open-source standards to describe biological systems. Other contributors include the Keck Graduate Institute (USA), the Systems Biology

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1112851943787442232005-04-07T11:01:00.000+05:302005-04-07T11:02:23.786+05:30

Source: Bioinformatics news portalA new technique for the Analysis of human genome to enable prediction of illnesses.The GARBAN project, drawn up by Navarre University, will enable the identification of therapeutic targets for cancer, depression and hepatitis.The School of Engineering at Navarre University and its Centre for Technical Studies and Research in Gipuzkoa (CEIT) have launched an

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1112851752279129292005-04-07T10:57:00.000+05:302005-04-07T10:59:12.280+05:30

Source: Bioinformatics News protalThe Max Planck Institute of Biochemistry at Martinsried and the German Cancer Research Center (DKFZ) at Heidelberg, both leading research centers in Europe, are utilizing Spotfire DecisionSite™ to dramatically enhance their research capabilities. These institutions were showcased during Spotfire's European User Conference held in Köln, Germany, where researchers

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1112720261637224762005-04-05T22:25:00.000+05:302005-04-05T22:27:41.636+05:30

Source: BMC BioinformaticsBackground: Array CGH (Comparative Genomic Hybridisation) is a molecular cytogenetic technique for the genome wide detection of chromosomal imbalances. It is based on the co-hybridisation of differentially labelled test and reference DNA onto arrays of genomic BAC clones, cDNAs or oligonucleotides, and after correction for various intervening variables, loss or gain in

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1112421475834285322005-04-02T11:22:00.000+05:302005-04-02T11:27:55.836+05:30

I am trying Yahoo! 360, a new blog service from Yahoo!, it's looking good. currently Yahoo! 360 tightly integrated with Yahoo!. I’ve got some invitations to Yahoo! 360, feel free to contact by commenting on this post or write to me at dnamicro (at) gmail (dot) com.my yahoo! 360

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com37tag:blogger.com,1999:blog-8976172.post-1112340966829038642005-04-01T12:59:00.000+05:302005-04-01T16:20:18.993+05:30

Hello all,Google is giving an extra GB of space for all its Gmail users. They have plans t give morethan 2GB in near future. Gmail is now available in colours and lot of other features. I hope most of the people got gmail invitations, if not drop me a note as comment with you emial or mail me at dnamicro (at) gmail (dot) comread more

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com1tag:blogger.com,1999:blog-8976172.post-1112094532253020952005-03-29T16:36:00.000+05:302005-03-29T16:38:52.256+05:30

Source: BioinformaticsMotivation: The use of oligonucleotide microarray technology requires a very detailed attention to the design of specific probes spotted on the solid phase. These problems are far from being commonplace since they refer to complex physicochemical constraints. Whereas there are more and more publicly available programs for microarray oligonucleotide design, most of them use

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1111995044875683692005-03-28T12:57:00.000+05:302005-03-28T13:00:44.876+05:30

Source: BMC BioinformaticsBackground: Accurate diagnosis of cancer subtypes remains a challenging problem. Building classifiers based on gene expression data is a promising approach; yet the selection of non-redundant but relevant genes is difficult. The selected gene set should be small enough to allow diagnosis even in regular clinical laboratories and ideally identify genes involved in

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com1tag:blogger.com,1999:blog-8976172.post-1111494167283460772005-03-22T17:51:00.000+05:302005-03-22T17:52:47.286+05:30

Source: BMC BioinformaticsBackground: Matlab is a high-performance language for technical computing, integrating computation, visualization, and programming in an easy-to-use environment. It has been widely used in many areas, such as, mathematics and computation, algorithm development, data acquisition, modeling, simulation, and scientific and engineering graphics. However, few functions are

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1111494077652907472005-03-22T17:49:00.000+05:302005-03-22T17:51:17.653+05:30

Source: BMC BioinformaticsBackground: Currently real time PCR is the most precise method by which to measure gene expression. The method generates a large amount of raw numerical data and processing may notably influence final results. The data processing is based either on standard curves or on PCR efficiency assessment. At the moment, the PCR efficiency approach is preferred in relative PCR

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1111121319331058222005-03-18T10:14:00.000+05:302005-03-18T10:18:39.333+05:30

Bioinfo-Online.net is a Bioinformatics News portal providing latest news, articles and online resources related to bioinformatics, computaional biology, genomics and systems biology. The site is updated daily with latest news. Registered users can post news, press releases, articles and links.http://www.bioinfo-online.net

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1110877411670314572005-03-15T14:31:00.000+05:302005-03-15T18:52:45.686+05:30

Source:BMC BioinformaticsHigh throughput microarray analyses result in many differentially expressed genes that are potentially responsible for the biological process of interest. In order to identify biological similarities between genes, publications from MEDLINE were identified in which pairs of gene names and combinations of gene name with specific keywords were co-mentioned. Results: MEDLINE

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1110186264315851952005-03-07T14:32:00.000+05:302005-03-07T14:34:24.316+05:30

Source: HubmedArrayCyGHt is a web-based application tool for analysis and visualization of microarray-comparative genomic hybridization (array-CGH) data. Full process of array-CGH data analysis, from normalization of raw data to the final visualization of copy number gain or loss, can be straightforwardly achieved on this arrayCyGHt system without any further software. ArrayCyGHt, therefore,

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1110186050469611172005-03-07T14:28:00.000+05:302005-03-07T14:31:37.203+05:30

Source: HubMedADAPT is an online database providing comprehensive mappings between Affymetrix probes and RefSeq and Ensembl transcripts. ADAPT was designed to help interpret microarray experiments by providing a means to explore the many to many relationships that exist between Probes, Probesets, transcripts and genes. AVAILABILITY: ADAPT can be queried via the web at http://

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1109753079680937602005-03-02T14:14:00.000+05:302005-03-02T14:14:39.680+05:30

Researchers at the National Cancer Institute (NCI), part of the National Institutes of Health (NIH), have built the largest open-source database for normal tissue from human organs. Scientists searching for genes that go awry and cause disease can use the NCI database as a crucial point of reference because it pinpoints which genes are expressed in many of the body’s major organs under normal

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1109752635746571712005-03-02T14:05:00.000+05:302005-03-02T14:07:15.746+05:30

Source: Sourceforge.netJGAP is a genetic algorithms package written in Java. It is designed to require minimum effort to use "out of the box", but is also designed to be highly modular to allow for custom components to be easily plugged in by the more adventurous. JGAP version 2.2 represents a new release bringing in many more test cases, bug fixes, and a new complex example ("function finder").

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1109255761473368482005-02-24T20:03:00.000+05:302005-02-24T20:06:01.476+05:30

Source: BMC BioinformaticsThe multitude of motif detection algorithms developed to date have largely focused on the detection of patterns in primary sequence. Since sequence-dependent DNA structure and flexibility may also play a role in protein-DNA interactions, the simultaneous exploration of sequence- and structure-based hypotheses about the composition of binding sites and the ordering of

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com2tag:blogger.com,1999:blog-8976172.post-1109255599246740242005-02-24T20:01:00.000+05:302005-02-24T20:03:19.250+05:30

Source: HubmedLarge amounts of knowledge about genes have been stored in public databases. One of the most challenging problems in Bioinformatics is, given all the information about the genes in the databases, determining the relationships between the genes. For example, how can we determine if genes are related and how closely they are related based on existing knowledge about their biological

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1109226286497597082005-02-24T11:52:00.000+05:302005-02-24T11:54:46.500+05:30

Source: Bionity.comRoche announced that its first microarray-based test, the AmpliChip CYP450 Test, has been cleared by the US Food and Drug Administration (FDA) for diagnostic use in the United States.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com1tag:blogger.com,1999:blog-8976172.post-1109087837302217952005-02-22T21:23:00.000+05:302005-02-22T21:27:17.303+05:30

Source: PRWebAriadne Genomics, Inc. today announced the release of Seqware Data Center, a sequence data management and personal BLAST software, enabling scientists to easily maintain and search annotated sequence collections. Seqware comes with GenBank pre-loaded. A free trial of Seqware is available at www.ariadnegenomics.com/products/seqware.html. [PRWEB Feb 7, 2005]

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com1tag:blogger.com,1999:blog-8976172.post-1109055643009863392005-02-22T12:28:00.000+05:302005-02-22T12:30:43.013+05:30

Source: BMC BioinformaticsAtlas is a biological data warehouse stores and integrates biological sequences, molecular interactions, homology information, functional annotations of genes, and biological ontologies. A recent article in BMC Bioinformatics discusses about Atlas. Atlas system is based on relational data models, APIs are written in C++, JAVA and Perl. Atlas stores and integrates local

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1108783775822837152005-02-19T08:57:00.000+05:302005-02-19T08:59:35.823+05:30

Source: Nature Signaling UpdateAfter DNA and protein chips, here come the carbohydrate microarrays capable of detecting and classifying bacteria based on their sugar binding affinities.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1108722184885465422005-02-18T15:50:00.000+05:302005-02-18T15:53:04.886+05:30

Source: HubMedWe propose a beta-mixture model approach to solve a variety of problems related to correlations of gene expression levels. For example, in meta-analyses of microarray gene expression data sets, a threshold value of correlation coefficients for gene expression levels is used to decide whether gene expression levels are strongly correlated across studies. Ad hoc threshold values such

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1108460558591563742005-02-15T15:09:00.000+05:302005-02-15T15:12:38.593+05:30

Source:NIH NewsThe National Cancer Institute (NCI), part of the National Institutes of Health (NIH), has released a new software tool that will facilitate the sharing and analysis of microarray data by the medical research community. Microarray technology has many applications in cancer research, including identifying novel genes associated with certain cancers, classifying tumors, and predicting

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1108380265686214552005-02-14T16:52:00.000+05:302005-02-14T16:54:25.686+05:30

"Koadarray represents a significant step forward in fully automated microarray image analysis." said Roland Howe, founder of Koada Technology, "For the first time the vast majority of microarray images can be analysed reliably and consistently without any user intervention. Other programs claim this, but unlike Koadarray they really don't deliver with real-world images. Another critical

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1108352291321011492005-02-14T08:56:00.000+05:302005-02-14T09:08:11.323+05:30

Source: BMC BioinformaticsBackground: Normalization is a critical step in analysis of gene expression profiles. For dual-labeled arrays, global normalization assumes that the majority of the genes on the array are non-differentially expressed between the two channels and that the number of over-expressed genes approximately equals the number of under-expressed genes. These assumptions can be

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1108145642007081642005-02-11T23:42:00.000+05:302005-02-11T23:44:02.010+05:30

Source:BMC BioinformaticsBackground: Collecting and managing information is a challenging task in a genome-wide profiling research project. Most databases and online computational tools require a direct human involvement. Information and computational results are presented in various multimedia formats (e.g., text, image, PDF, word files, etc.), many of which cannot be automatically processed by

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1108145423184660952005-02-11T23:38:00.000+05:302005-02-11T23:42:30.346+05:30

Source: BMC Bioinformatics Background: Microarray-CGH experiments are used to detect and map chromosomal imbalances, by hybridizing targets of genomic DNA from a test and a reference sample to sequences immobilized on a slide. These probes are genomic DNA sequences (BACs) that are mapped on the genome. The signal has a spatial coherence that can be handled by specific statistical tools.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1108144815025861982005-02-11T23:28:00.000+05:302005-02-11T23:30:15.026+05:30

Source: Linux Insider: Open sourceAn open-source program for microarray data visualization is now available. "Open-source software encourages innovation by allowing users to extend the functionality of existing applications," scientists in California explained.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1108020185282455942005-02-10T13:51:00.000+05:302005-02-10T12:53:05.283+05:30

Source: BMC BioinformaticsBackground: The large amount of data that are currently produced in the biological sciences can no longer be explored and visualized efficiently with traditional, specialized software. Instead, new capabilities are needed that offer flexibility, rapid application development and deployment as standalone applications or available through the Web. Results: We describe a

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1108020043183705602005-02-10T13:47:00.000+05:302005-02-10T12:50:43.183+05:30

Source:HubMedStatistical analysis of amino acid and nucleotide sequences, especially sequence alignment, is one of the most commonly performed tasks in modern molecular biology. However, for many tasks in bioinformatics, the requirement for the features in an alignment to be consecutive is restrictive and 'n-grams' (aka k-tuples) have been used as features instead. N-grams are usually short

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1107806915339921512005-02-08T01:37:00.000+05:302005-02-19T08:56:54.303+05:30

Source: PRWebAriadne Genomics, Inc. today announced the release of Seqware Data Center, a sequence data management and personal BLAST software, enabling scientists to easily maintain and search annotated sequence collections. Seqware comes with GenBank pre-loaded. A free trial of Seqware is available at www.ariadnegenomics.com/products/seqware.html. [PRWEB Feb 7, 2005]

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1107772660426455002005-02-07T16:05:00.000+05:302005-02-07T16:07:40.426+05:30

Source: HubMedSUMMARY: BioIE is a rule-based system that extracts informative sentences relating to protein families, their structures, functions and diseases from the biomedical literature. Based on manual definition of templates and rules, it aims at precise sentence extraction rather than wide recall. After uploading source text or retrieving abstracts from MEDLINE, users can extract sentences

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1107685127401853802005-02-06T15:47:00.000+05:302005-02-06T15:48:47.400+05:30

Transgenic Software Inc. has announced today the details of an extensive global marketing campaign for the upcoming next release of its Transgenic Bioinformatics LIMS Software. [PRWEB Feb 6, 2005]

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1107527782337126472005-02-04T20:04:00.000+05:302005-02-04T20:06:22.336+05:30

Source: The Hindu Business Line: Industry & Economy BIO Asia-2005, the annual global bio-business forum being hosted jointly by the State Government, Genome Valley and All India Biotech Association (AIBA), will unveil the activities of the Federation of Asian Biotech Associations (FABA). ...

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1107527604869574232005-02-04T20:00:00.000+05:302005-02-04T20:03:24.870+05:30

Source: IST ResultsHelping life scientists navigate the exponentially growing amount of raw and derived digital data produced by genomics and bio-informatics research, and its associated information (publications, sequence and sequence-related information, digital image data) are a new set of search tools.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1107513750246203352005-02-04T16:10:00.000+05:302005-02-04T16:12:30.246+05:30

Source:CDC Genetics (January 21) The International Genomics Consortium's (IGC) reports its “Expression Project for Oncology (expO) has released clinically annotated gene expression profiles for 60 tumor specimens, completing the initial phase of the nation's first and eventually largest public database dedicated to standardized gene expression data. The clinically annotated dataset is available

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1107430685587979372005-02-03T17:06:00.000+05:302005-02-03T17:08:05.586+05:30

Source: The Hindu Business Line "INDIA missed a great opportunity in partnering the human genome project and thereby lost the utility of tremendous data. I suggest that the Indian biomedical community take the initiative to become a working partner in the proteomics project of ...

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1107430097147214242005-02-03T16:56:00.000+05:302005-02-03T16:58:17.146+05:30

Source:Condensed Matter updates on arXiv.org Authors: Shinsuke Uda, Yoshiyuki Kabashima The demand for extracting rules from high dimensional real world data is increasing in various fields, bioinformatics in particular. However, the possible redundancy of such data sometimes makes it difficult to obtain a good generalization ability for novel samples. To resolve this problem, we provide a scheme

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1107429919147146692005-02-03T16:51:00.000+05:302005-02-03T16:55:19.146+05:30

Source: Wired News An article published in wired news discusses the recent interactions of Software enginners and Biologists. "Scientists can read the activity of any given gene thanks to technologies called microarrays. They reveal whether a gene is turned on or off, and whether that gene is naughty or nice. But the mountains of information microarrays create often languish in obscure databases"

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1107341119562336802005-02-02T16:14:00.000+05:302005-02-02T16:15:19.563+05:30

Source: BMC BioinformaticsGeneNotes is the first application that allows users to collect and manage multimedia biological information about genes/ESTs. GeneNotes provides an integrated environment for users to surf the Internet, collect notes for genes/ESTs, and retrieve notes. GeneNotes is supported by a server that integrates gene annotations from many major databases (e.g., HGNC, MGI, etc.).

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1107340616403766782005-02-02T16:02:00.000+05:302005-02-02T16:06:56.403+05:30

Source: HubMedMath Biosci. 2005 Jan; 193(1): 79-100 Tsai CA, Lee TC, Ho IC, Yang UC, Chen CH, Chen JJ DNA microarray technology provides tools for studying the expression profiles of a large number of distinct genes simultaneously. This technology has been applied to sample clustering and sample prediction. Because of a large number of genes measured, many of the genes in the original data set

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1107240055401672692005-02-01T13:09:00.000+05:302005-02-01T12:10:55.400+05:30

Source: High Tech Magazine: Special ReportA group of British computer scientists have proposed a number of "grand challenges" for IT that they hope will drive forward research, similar to the way the human genome project drove life sciences research through the 1990s...

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1107239960730046272005-02-01T13:06:00.000+05:302005-02-01T12:09:20.730+05:30

Agilent Technologies Inc.introduced its software for Human Genome CGH Microarray.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1107194199037143592005-01-31T23:12:00.000+05:302005-01-31T23:26:39.036+05:30

Source: Medical News TodayAs the human genome sequence neared completion several years ago, geneticists eagerly began discussing which other organisms to sequence - partly to see which DNA regions are similar across species and therefore likely to serve critical functions... click link for more info.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com1tag:blogger.com,1999:blog-8976172.post-1106939247640311752005-01-29T01:35:00.000+05:302005-01-29T00:37:27.640+05:30

Source; Genome BiologyAs more methods are developed to analyze RNA-profiling data, assessing their performance using control datasets becomes increasingly important. Results: We present a 'spike-in' experiment for Affymetrix GeneChips that provides a defined dataset of 3,860 RNA species, which we use to evaluate analysis options for identifying differentially expressed genes. The experimental

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1106898679933121182005-01-28T13:16:00.000+05:302005-01-28T13:21:19.933+05:30

ChilibotRecently i came across Chilibot, its interesting you can try this. Chilibot is a software robot that digs into the PubMed database to hunt for information regarding the relationships between genes, proteins and keywords of your interest.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1106894438278428222005-01-28T13:02:00.000+05:302005-01-28T12:10:38.276+05:30

Source: Genome BiologyGenome-wide analytical tools are now allowing the discovery of the design rules that govern regulatory networks. Two recent studies in yeast have helped reveal the relatively small number of transcription-factor control strategies that cells employ to maximize their regulatory options using only a small number of components.

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Source: Medical News Today(January 23) “While large-scale genomic sequencing technologies over the past decade have given scientists databases filled with the complete genomes of hundreds of organisms, not enough is being done to interpret all that data by assigning functions to sequenced genes (annotation), according to a report released today by the American Academy of Microbiology.”

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1106824436046424122005-01-27T16:40:00.000+05:302005-01-27T16:43:56.046+05:30

Source: Medical News TodayThe Max Planck Society initiates a new "Chemical Genomics Centre" at the crossroads of Biology, Chemistry and Medicine in Dortmund - While the field of genetics investigates and influences the life's processes by modifying the genes themselves, the field of chemical genetics pursues this goal using chemical compounds that modulate the functioning of the gene and its

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Source: ITPapers.comThe NCI Thesaurus is a public domain description logic-based terminology produced by the National Cancer Institute, and distributed as a component of the NCI Center for Bioinformatics caCORE distribution. It is deep and complex compared to most broad clinical vocabularies, implementing rich semantic interrelationships between the nodes of its taxonomies. The semantic

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Source:Condensed Matter updates on arXiv.org Author:A.N. GorbanA non-linear kinetic system with conservation of supports for distributions generically has (under some additional technical conditions) finite-dimensional asymptotics. This conservation of support has a quasi-biological interpretation: inheritance (if a gene is not present initially in an isolated population without mutations, then

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1106564653304879982005-01-24T16:27:00.000+05:302005-01-24T16:34:13.303+05:30

Source: HubMedEDGE is a resource for toxicology-related gene expression information. The ultimate goal of the EDGE is to map transcriptional changes from chemical exposure that will someday be used as a diagnostic "fingerprint" to predict toxicity as well as provide valuable insights into the basic molecular changes responsible. This web-accessible database and informatics suite, known as

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1106366516110626622005-01-22T09:29:00.000+05:302005-01-22T09:31:56.110+05:30

Source: BMC BioinformaticsA recent article published in BMC Bioinformatics discusses a robust semiparametric method in a two-way semi-linear model (TW-SLM) for normalization of cDNA microarray data. According to the article this method does not make the usual assumptions underlying some of the existing methods. For example, it does not assume that: (i) the percentage of differentially expressed

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1106300325324277062005-01-21T15:06:00.000+05:302005-01-21T15:08:45.323+05:30

Source: BMC BioinformaticsMILANO (Microarray Literature-based Annotation), ia a web bases tool that allows annotation of lists of genes derived from microarray results by user defined terms. MILANO expands the gene names to include all their informative synonyms while filtering out gene symbols that are likely to be less informative as literature searching terms. MILANO supports searching two

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1106153174751487472005-01-19T22:14:00.000+05:302005-01-19T22:16:14.753+05:30

Source: Creative Commons WeblogAn interesting article from Wired on the folks at Biological Innovation for Open Society (BIOS), a group in Australia advocating an open-source approach to biology. I know the folks at BIOS and recommend you poke around their site if you're interested in open biology. Here's the story; it's a good read. One point, which is actually pretty major, of contention. We

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1106114417514765692005-01-19T11:25:00.000+05:302005-01-19T11:30:17.513+05:30

Source: Java WeblogsChinook, a peer-to-peer (P2P) bioinformatics service (using JXTA ), from the incubator at Global Education and Learning Community (GELC) of java.net. read on for more info and how it is built.

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Source: NIH NewsA study funded by the NCI, part of the National Institutes of Health, shows for the first time that microarray data generated in different laboratories can produce highly comparable results. Four different laboratories have analyzed the same tumor samples for gene expression.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1106032084178097962005-01-18T13:34:00.000+05:302005-01-18T12:38:04.176+05:30

Source: Medical News TodayCurrent Plant and Animal Genome Arrays to Be Featured in Over Twenty Posters and Presentations at the Plant and Animal Genome XIII Conference Today, Affymetrix, Inc (Nasdaq: AFFX) announced plans to make eight new GeneChip(R) plant and animal genome arrays available in 2005 as part of its Consortia Program, including canine, Rhesus macaque, Medicago trancatula (legume),

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1105974003843048812005-01-17T20:26:00.000+05:302005-01-17T20:30:03.843+05:30

Source: HubMedAGML Central is a web-based open-source public infrastructure for dissemination of 2-D Gel Electrophoresis (2-DE) proteomics data in AGML format (Annotated Gel Markup Language). It includes a growing collection of converters from proprietary formats such as those produced by PDQUEST (BioRad), PHORETIX 2-D (Nonlinear Dynamics) and Melanie (GenBio SA). The resulting unifying AGML

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1105550350921612922005-01-12T22:43:00.000+05:302005-01-12T22:49:10.920+05:30

Source: Medical News TodayFirst microarray-based diagnostic test for detection of genetic variations that can influence drug efficacy and adverse drug reactions - Roche announced today that its first microarray-based test, the AmpliChip CYP450 Test, has been cleared by the US Food and Drug Administration (FDA) for diagnostic use in the United States... click link for more info.

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Source:MedlineRMedlineR is an open source library written in the R programming language for Medline literature data mining. This includes programs to query Medline through the NCBI PubMed database; to construct the co-occurrence matrix; and to visualize the network topology of query terms. The open source nature of this library allows users to extend it freely in the statistical programming

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1105511886786154362005-01-12T13:07:00.000+05:302005-01-12T12:08:06.786+05:30

Source: HubMedLi X, Zhang Y Genomics Proteomics Bioinformatics. 2003 Nov ; 1(4): 299-303 It is widely recognized that exchange, distribution, and integration of biological data are the keys to improve bioinformatics and genome biology in post-genomic era. However, the problem of exchanging and integrating biology data is not solved satisfactorily. The eXtensible Markup Language (XML) is rapidly

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1105511519888258522005-01-12T11:53:00.000+05:302005-01-12T12:01:59.886+05:30

Source: HubMed: PubMed LinkArrayOme is a program that calculates the size of genomes represented by microarray-based probes and facilitates recognition of key bacterial strains carrying large numbers of novel genes. Protein-coding sequences (CDS) that are contiguous on annotated reference templates and classified as 'Present' in the test strain by hybridization to microarrays are merged into ICs

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1105458356445403712005-01-11T21:14:00.000+05:302005-01-11T21:15:56.446+05:30

Source: Medical News TodayGroundbreaking research project may help boost vaccine development - In an innovative project with implications for malaria vaccine development, scientists have used genomics, proteomics and gene expression studies to trace how malaria parasites evolve on a molecular level as they move between their hosts and insect vectors... click link for more info.

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Source: Peter Scott's Library BlogThe Public Library of Science (PLoS) has embarked on a new phase of its ambitious plan to transform scientific publishing, announcing the 2005 launch of three new open-access journals: PLoS Computational Biology, PLoS Genetics, and PLoS Pathogens. These PLoS Community Journals answer the increasing calls of scientists, scientific societies, and governments around

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1105188990967542082005-01-08T18:25:00.000+05:302005-01-08T18:26:30.966+05:30

Source:Nature Signaling Update:A new microarray-based strategy offers a tool for the rapid and sensitive identification of binding sites throughout the genome for virtually any transcription factor.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1105076696677322252005-01-07T11:06:00.000+05:302005-01-07T11:18:07.166+05:30

Source: Broad Institute Broad Institute has developed The Argo Genome Browser tool for visualizing and manually annotating whole genomes. The features of this standalone Java application proivdes display of sequence and annotation tracks, Extensive customization options, Interactive zoom from megabase to nucleotide resolution, Editing of individual features, supporting manual annotation,

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1104997643775925122005-01-06T13:14:00.000+05:302005-01-06T13:17:23.776+05:30

Source: The Hindu BusinessLineHYDERABAD: The All-India Conference of Intellectuals (AICOI), New Delhi has conferred "The Great Son of the Soil" award upon Dr Lalji Singh, Director, Centre for Cellular and Molecular Biology, here for his contributions in science and Technology.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1104997392848599442005-01-06T13:11:00.000+05:302005-01-06T13:13:12.850+05:30

Source: freshmeat.netPlasmidb is a database management system for manipulating, viewing, and storing molecular biology information rapidly and easily. It is capable of handling constructed plasmids, clones, standard vectors, primers, antibiotics, enzymes, and more.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1104938188579611662005-01-05T20:44:00.000+05:302005-01-05T20:46:28.580+05:30

Source: BMC BioinformaticsIn the post-genomic era, correct gene prediction has become one of the biggest challenges in genome annotation. Improved promoter prediction methods can be one step towards developing more reliable ab initio gene prediction methods. This work presents a novel prokaryotic promoter prediction method based on DNA stability.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1104915251307943322005-01-05T14:21:00.000+05:302005-01-05T14:24:11.306+05:30

Link: PubMedThis article describes the Oracle Database 10g implementation of BLAST and Regular Expression Searches and provides case studies of their usage in bioinformatics. http://www.oracle.com/technology/software/index.html.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1104849742859662972005-01-04T20:04:00.000+05:302005-01-04T20:12:22.860+05:30

Source: The Cancer BlogA recent blog post at The Cancer Blog requests researchers to contribute to cancer research by donating unused computer time. The Cancer Blog: Millions of users leave their computers on at all times. This idle time could be used to help the Human Proteome Folding Project, which will bring many insights into cancer research. The project is powered by grid.org, which uses

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1104848768827904982005-01-04T19:55:00.000+05:302005-01-04T19:56:08.826+05:30

Source: Genome BiologyA second species of fruit fly has just been added to the growing list of organisms with complete and annotated genome sequences. The publication of the Drosophila pseudoobscura sequence provides a snapshot of how genomes have changed over tens of millions of years and sets the stage for the analysis of more fly genomes.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1104560009610374532005-01-01T11:41:00.000+05:302005-01-01T11:43:29.610+05:30

Wish You A very Happy and Prosperous New Year... May All your Dreams come true.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1104475951778777702004-12-31T13:20:00.000+05:302005-01-03T22:55:46.446+05:30

Source: Science Commons Science Commons is a new project of Creative Commons and will launch on January 1, 2005. The mission of Science Commons is to encourage scientific innovation by making it easier for scientists, universities, and industries to use literature, data, and other scientific intellectual property and to share their knowledge with others. Science Commons works within current

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com2tag:blogger.com,1999:blog-8976172.post-1104475833922392582004-12-31T13:18:00.000+05:302004-12-31T12:20:33.923+05:30

Source: CODEbioFOX Code bioFOX aims at implementing various bioinformatics tools as an extension on the Mozilla and Firefox browsers. Analysis of your favorite gene(s) usually require(s) retrieving it from a database like NCBI or Swiss-Prot. Code bioFOX upon implementation would make analysis of desired sequences easier than it is today. For example, selecting a sequence and submitting it

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1104464128870891752004-12-31T09:02:00.000+05:302004-12-31T09:05:28.870+05:30

Source: EMBL Linkage disequilibrium viewer provides a new perspective on disease susceptibility Human geneticists can now see which variations on the human genome are inherited together, thanks to a new way of viewing genetic variations in the latest release of the Ensembl genome browser [a joint project between EMBL's EBI and the Wellcome Trust Sanger Institute]. The new viewer will help

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1104152744281407982004-12-27T18:26:00.000+05:302004-12-27T18:35:44.283+05:30

The article published in Nature describes microchip based technology for multiplex gene synthesis.PubMed Source: Nature. 2004 Dec 23; 432(7020): 1050-4 Testing the many hypotheses from genomics and systems biology experiments demands accurate and cost-effective gene and genome synthesis. Here we describe a microchip-based technology for multiplex gene synthesis. Pools of thousands of '

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1104125458334562722004-12-27T10:58:00.000+05:302004-12-27T11:04:02.810+05:30

Source:BMC GenomicsA recent article published on BMC Genomics identifies a meta-signature of breast cancer from gene expression data.Details:Background: An increasing number of studies have profiled tumor specimens using distinct microarray platforms and analysis techniques. With the accumulating amount of microarray data, one of the most intriguing yet challenging tasks is to develop robust

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1103788049090301912004-12-23T13:16:00.000+05:302004-12-23T13:17:29.090+05:30

The Macromolecular Structure Database (MSD) group (http://www.ebi.ac.uk/msd/) continues to enhance the quality and consistency of macromolecular structure data in the worldwide Protein Data Bank (wwPDB) and to work towards the integration of various bioinformatics data resources. One of the major obstacles to the improved integration of structural databases such as MSD and sequence databases like

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1103787959582115262004-12-23T13:15:00.000+05:302004-12-23T13:15:59.583+05:30

ArrayExpress is a public repository for microarray data that supports the MIAME (Minimum Informa-tion About a Microarray Experiment) requirements and stores well-annotated raw and normalized data. As of November 2004, ArrayExpress contains data from approximately 12 000 hybridizations covering 35 species. Data can be submitted online or directly from local databases or LIMS in a standard format,

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1103787893716470272004-12-23T13:14:00.000+05:302004-12-23T13:14:53.716+05:30

Source: IST Results Bioinformatics is a relatively new scientific discipline concerning the use of computers in biological research, especially gene sequencing. The EMBER project has developed learning resources to support training in this important new field.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1103787776635805322004-12-23T13:11:00.000+05:302004-12-23T13:12:56.636+05:30

Source:The Institute for Systems Biology Effort Will Tackle a Grand Computational Challenge in Genomics Research The Institute for Systems Biology (ISB) announced today that in partnership with IBM, United Devices and the University of Washington, it has launched the Human Proteome Folding Project on World Community Grid. This project, the first to run on the Grid will help predict the shape of

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1103787658841944702004-12-23T13:07:00.000+05:302004-12-23T13:10:58.840+05:30

Link: BAMarrayBAM is a new statistical technique for detecting differentially expressing genes from multigroup microarray data from Case Western Reserve University. BAM's success relies on a special type of inferential regularization (i.e. borrowing strength across the data) allowing it to balance the number of false detections against false non-detections. This differs from current statistical

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1103224074016864852004-12-17T01:34:00.000+05:302004-12-17T00:37:54.016+05:30

Source: BioinformaticsCGH-Plotter is a MATLAB toolbox with a graphical user interface for the analysis of comparative genomic hybridization (CGH) microarray data. CGH-Plotter provides a tool for rapid visualization of CGH-data according to the locations of the genes along the genome. In addition, the CGH-Plotter identifies regions of amplifications and deletions, using k-means clustering and

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1103223732612974902004-12-17T01:26:00.000+05:302004-12-17T00:32:12.613+05:30

Source: BMC Bioinformatics Gecko (Gene Expression: Computation and Knowledge Organization) is a complete, high-capacity centralized gene expression analysis system, developed in response to the needs of a distributed user community. Results: Based on a client-server architecture, with a centralized repository of typically many tens of thousands of Affymetrix scans, Gecko includes automatic

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1103199847255862002004-12-16T17:52:00.000+05:302004-12-16T17:54:07.256+05:30

123Bharath.com: Health News "New Delhi, Dec 15 : A new software tool which would help in preadiction of possible vaccine candidates from a pathogen, thus reducing time in vaccine development, was released here today."

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1103050513954340702004-12-15T01:24:00.000+05:302004-12-15T00:25:13.953+05:30

Java Today Weblogs: " Two more projects have been added to the Global Education and Learning Community (GELC) at java.net. This week we have a new project based on JXTA P2P for bioinformatics. The second project is neural networks that will help categorize poems after their authors. Take a look and see if there is a project you are interested in and email the owners on how you can help out.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1102676158121105042004-12-10T16:23:00.000+05:302004-12-10T16:25:58.120+05:30

Source:BMC BioinformaticsBackground: Microarray data normalization is an important step for obtaining data that are reliable and usable for subsequent analysis. One of the most commonly utilized normalization techniques is the locally weighted scatterplot smoothing (LOWESS) algorithm. However, a much overlooked concern with the LOWESS normalization strategy deals with choosing the appropriate

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1102618089783206122004-12-10T01:16:00.000+05:302004-12-10T00:20:45.243+05:30

The Unofficial Apple Weblog: " AbOrygen’s biOpen is a sequence analysis and 3D structure visualization software package. Its modular plugin architecture allows dynamic integration of analysis tools into the software’s core. New features include pairwise sequence alignment tools using BLAST and MEGABLAST, and the ability to display any translation frame in the nucleic acid sequence window. A demo

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1102617897854650322004-12-10T01:08:00.000+05:302004-12-10T00:14:57.853+05:30

Hyderabad based Ocimum Biosolutions and Genome Explorations Inc USA formed a strategic alliance. They offer microarray data analysis services to Indian Researchers, initially Ocimum Biosolutions will send these samples to Genome Exporations facility at Memphis in USA. At a later stage Genome Explorations plans set up a Microarray facility in India in collaboration with Ocimum Biosolutions.

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1102442719050990992004-12-07T23:35:00.000+05:302004-12-07T23:35:19.050+05:30

Source: BMC Bioinformatics Systems Biology Markup Language (SBML) is gaining broad usage as a standard for representing dynamical systems as data structures. The open source statistical programming environment R is widely used by biostatisticians involved in microarray analyses. An interface between SBML and R does not exist, though one might be useful to R users interested in SBML, and SBML

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1102396941212730152004-12-07T10:48:00.000+05:302004-12-07T10:52:21.213+05:30

Finak G, Godin N, Hallett M, Pepin F, Rajabi Z, Srivastava V, Tang Z Bioinformatics. 2004 11 30; () : BIAS (Bioinformatics Integrated Application Software) provides the tools necessary for carrying out integrative Bioinformatics research requiring multiple datasets and analysis tools. It follows an object-relational strategy for providing persistent objects, allows third-party tools to be

dnamicrohttp://www.blogger.com/profile/11388182593633861046noreply@blogger.com0tag:blogger.com,1999:blog-8976172.post-1102358805198429982004-12-07T01:16:00.000+05:302004-12-07T00:16:45.196+05:30

In BioWire 2k: Biotech

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